Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs74712819 chr16:56461773 G/A 0.000204 177 25.17 26.97 36.37 KM Plot
PCPG rs74742778 chr13:114155356 A/T 4.65E-12 177 24.23 29.95 3.32 KM Plot
PCPG rs74748005 chr2:118697271 A/G 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs74772751 chr10:131542443 C/G 0.000116 174 25.4 30.18 10.3 KM Plot
PCPG rs74841729 chr20:6006043 A/T 0 178 25.47 23.53 2.93 KM Plot
PCPG rs74871253 chr7:1131141 C/G 1.13E-7 175 25.7 23.57 19.87 KM Plot
PCPG rs74887741 chr7:1110658 G/T 0.000259 174 25.7 24.95 49.58 KM Plot
PCPG rs74908758 chr16:71704511 ATAGT/A 9.19E-6 174 24.47 31.48 14.5 KM Plot
PCPG rs74936050 chr7:36154778 G/A 0.000433 178 25.77 24.5 14.37 KM Plot
PCPG rs74942326 chr8:140986284 T/C 1.11E-16 174 25.4 30.65 3.17 KM Plot
PCPG rs74947370 chr16:1976625 A/T 1.22E-5 174 25.77 23.37 13.23 KM Plot
PCPG rs74947872 chr2:242535065 G/A 4.16E-5 177 25.87 27.27 20.2 KM Plot
PCPG rs74957414 chr17:1422821 C/T 1.37E-5 176 24.7 25.87 13.02 KM Plot
PCPG rs74959868 chr7:158686963 T/C 0 177 25.53 20.37 3.17 KM Plot
PCPG rs74960156 chr19:58147989 A/C 2.64E-11 172 25.97 21.98 10.3 KM Plot